3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CUGAG*CGAGAUGAG
Length
14 nucleotides
Bulged bases
6OGG|1|1|G|2780
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OGG_095 not in the Motif Atlas
Homologous match to IL_5J7L_345
Geometric discrepancy: 0.214
The information below is about IL_5J7L_345
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.3
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

6OGG|1|1|C|2636
6OGG|1|1|U|2637
6OGG|1|1|G|2638
6OGG|1|1|A|2639
6OGG|1|1|G|2640
*
6OGG|1|1|C|2774
6OGG|1|1|G|2775
6OGG|1|1|A|2776
6OGG|1|1|G|2777
6OGG|1|1|A|2778
6OGG|1|1|U|2779
6OGG|1|1|G|2780
6OGG|1|1|A|2781
6OGG|1|1|G|2782

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain c
50S ribosomal protein L3
Chain j
50S ribosomal protein L13

Coloring options:


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