3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
GGAGUACG*UAAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OGG_144 not in the Motif Atlas
Homologous match to IL_4LFB_034
Geometric discrepancy: 0.2063
The information below is about IL_4LFB_034
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.4
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
4

Unit IDs

6OGG|1|3|G|887
6OGG|1|3|G|888
6OGG|1|3|A|889
6OGG|1|3|G|890
6OGG|1|3|U|891
6OGG|1|3|A|892
6OGG|1|3|C|893
6OGG|1|3|G|894
*
6OGG|1|3|U|905
6OGG|1|3|A|906
6OGG|1|3|A|907
6OGG|1|3|A|908
6OGG|1|3|A|909
6OGG|1|3|C|910

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain Q
30S ribosomal protein S12

Coloring options:


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