IL_6OGI_098

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OGI_098 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1378

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6OGI|1|1|C|2636
6OGI|1|1|U|2637
6OGI|1|1|G|2638
6OGI|1|1|A|2639
6OGI|1|1|G|2640
*
6OGI|1|1|C|2774
6OGI|1|1|G|2775
6OGI|1|1|A|2776
6OGI|1|1|G|2777
6OGI|1|1|A|2778
6OGI|1|1|U|2779
6OGI|1|1|G|2780
6OGI|1|1|A|2781
6OGI|1|1|G|2782

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain j

50S ribosomal protein L13