IL_6OGI_100
3D structure
- PDB id
- 6OGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UCACUG*UAAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OGI_100 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.3141
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6OGI|1|1|U|2680
6OGI|1|1|C|2681
6OGI|1|1|A|2682
6OGI|1|1|C|2683
6OGI|1|1|U|2684
6OGI|1|1|G|2685
*
6OGI|1|1|U|2724
6OGI|1|1|A|2725
6OGI|1|1|A|2726
6OGI|1|1|A|2727
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L14
- Chain n
- 50S ribosomal protein L17
- Chain p
- 50S ribosomal protein L19
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