IL_6OIG_113

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUAGUAC*GGAACAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OIG_113 not in the Motif Atlas

Homologous match to IL_8C3A_125

Geometric discrepancy: 0.2139

The information below is about IL_8C3A_125

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6OIG|1|5|C|3018
6OIG|1|5|U|3019
6OIG|1|5|U|3020
6OIG|1|5|A|3021
6OIG|1|5|G|3022
6OIG|1|5|U|3023
6OIG|1|5|A|3024
6OIG|1|5|C|3025
*
6OIG|1|5|G|3030
6OIG|1|5|G|3031
6OIG|1|5|A|3032
6OIG|1|5|A|3033
6OIG|1|5|C|3034
6OIG|1|5|A|3035
6OIG|1|5|G|3036

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain H

60S ribosomal protein L9-A

Chain V

60S ribosomal protein L23-A