IL_6OLE_177
3D structure
- PDB id
- 6OLE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 6OLE|1|t|A|1941
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLE_177 not in the Motif Atlas
- Homologous match to IL_5TBW_054
- Geometric discrepancy: 0.2908
- The information below is about IL_5TBW_054
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6OLE|1|t|U|1938
6OLE|1|t|A|1939
6OLE|1|t|U|1940
6OLE|1|t|A|1941
6OLE|1|t|G|1942
6OLE|1|t|A|1943
6OLE|1|t|C|1944
6OLE|1|t|A|1945
6OLE|1|t|G|1946
*
6OLE|1|t|C|2003
6OLE|1|t|C|2004
6OLE|1|t|G|2005
6OLE|1|t|A|2006
6OLE|1|t|A|2007
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain T
- 60S ribosomal protein L18a
- Chain n
- 60S ribosomal protein L40
Coloring options: