IL_6OLE_263

3D structure

PDB id

6OLE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCACUC*GGA(OMG)

Length

10 nucleotides

Bulged bases

6OLE|1|S2|G|507

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLE_263 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.1276

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6OLE|1|S2|C|491
6OLE|1|S2|C|492
6OLE|1|S2|A|493
6OLE|1|S2|C|494
6OLE|1|S2|U|495
6OLE|1|S2|C|496
*
6OLE|1|S2|G|506
6OLE|1|S2|G|507
6OLE|1|S2|A|508
6OLE|1|S2|OMG|509

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24