IL_6OLF_003
3D structure
- PDB id
- 6OLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CG*CCGG
- Length
- 6 nucleotides
- Bulged bases
- 6OLF|1|t|C|334
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLF_003 not in the Motif Atlas
- Geometric match to IL_1U9S_005
- Geometric discrepancy: 0.312
- The information below is about IL_1U9S_005
- Detailed Annotation
- Minor groove platform, major groove intercalation
- Broad Annotation
- Minor groove platform, major groove intercalation
- Motif group
- IL_55206.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
6OLF|1|D|C|32
6OLF|1|D|G|33
*
6OLF|1|t|C|333
6OLF|1|t|C|334
6OLF|1|t|G|335
6OLF|1|t|G|336
Current chains
- Chain D
- 5.8S ribosomal RNA
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain M
- 60S ribosomal protein L13
- Chain O
- 60S ribosomal protein L15
- Chain i
- 60S ribosomal protein L35
- Chain k
- 60S ribosomal protein L37
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