3D structure

PDB id
6OLF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CG*CCGG
Length
6 nucleotides
Bulged bases
6OLF|1|t|C|334
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OLF_003 not in the Motif Atlas
Geometric match to IL_1U9S_005
Geometric discrepancy: 0.312
The information below is about IL_1U9S_005
Detailed Annotation
Minor groove platform, major groove intercalation
Broad Annotation
Minor groove platform, major groove intercalation
Motif group
IL_95583.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

6OLF|1|D|C|32
6OLF|1|D|G|33
*
6OLF|1|t|C|333
6OLF|1|t|C|334
6OLF|1|t|G|335
6OLF|1|t|G|336

Current chains

Chain D
5.8S ribosomal RNA
Chain t
28S ribosomal RNA

Nearby chains

Chain C
60S ribosomal protein L4
Chain M
60S ribosomal protein L13
Chain O
60S ribosomal protein L15
Chain i
60S ribosomal protein L35
Chain k
60S ribosomal protein L37

Coloring options:


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