IL_6OLF_028

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

6OLF|1|S2|U|305, 6OLF|1|S2|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_028 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3831

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6OLF|1|S2|C|216
6OLF|1|S2|A|217
6OLF|1|S2|U|218
6OLF|1|S2|U|219
*
6OLF|1|S2|A|302
6OLF|1|S2|C|303
6OLF|1|S2|C|304
6OLF|1|S2|U|305
6OLF|1|S2|C|306
6OLF|1|S2|G|307
6OLF|1|S2|G|308
6OLF|1|S2|G|309

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SI

40S ribosomal protein S8