3D structure

PDB id
6OLF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UUAAG*CCAUA
Length
10 nucleotides
Bulged bases
6OLF|1|t|U|2051
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OLF_165 not in the Motif Atlas
Homologous match to IL_5TBW_048
Geometric discrepancy: 0.2099
The information below is about IL_5TBW_048
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

6OLF|1|t|U|1886
6OLF|1|t|U|1887
6OLF|1|t|A|1888
6OLF|1|t|A|1889
6OLF|1|t|G|1890
*
6OLF|1|t|C|2048
6OLF|1|t|C|2049
6OLF|1|t|A|2050
6OLF|1|t|U|2051
6OLF|1|t|A|2052

Current chains

Chain t
28S ribosomal RNA

Nearby chains

Chain E
5S ribosomal RNA; 5S rRNA
Chain H
60S ribosomal protein L7
Chain R
60S ribosomal protein L18
Chain f
60S ribosomal protein L32
Chain g
60S ribosomal protein L35a

Coloring options:


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