IL_6OLF_166
3D structure
- PDB id
- 6OLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLF_166 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.3243
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
6OLF|1|t|C|1892
6OLF|1|t|G|1893
6OLF|1|t|C|1894
6OLF|1|t|C|1895
6OLF|1|t|C|1896
6OLF|1|t|G|1897
6OLF|1|t|A|1898
6OLF|1|t|U|1899
*
6OLF|1|t|G|2045
6OLF|1|t|G|2046
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L7
- Chain P
- 60S ribosomal protein L13a
- Chain T
- 60S ribosomal protein L18a
- Chain g
- 60S ribosomal protein L35a
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