IL_6OLF_177
3D structure
- PDB id
- 6OLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLF_177 not in the Motif Atlas
- Homologous match to IL_5TBW_061
- Geometric discrepancy: 0.1378
- The information below is about IL_5TBW_061
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
6OLF|1|t|G|2337
6OLF|1|t|U|2338
6OLF|1|t|A|2339
6OLF|1|t|G|2340
6OLF|1|t|U|2341
6OLF|1|t|A|2342
6OLF|1|t|G|2343
*
6OLF|1|t|C|3829
6OLF|1|t|G|3830
6OLF|1|t|A|3831
6OLF|1|t|A|3832
6OLF|1|t|A|3833
6OLF|1|t|C|3834
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain Q
- 60S ribosomal protein L17
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