IL_6OLF_184

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_184 not in the Motif Atlas

Geometric match to IL_5TBW_067

Geometric discrepancy: 0.3087

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6OLF|1|t|C|2568
6OLF|1|t|G|2569
6OLF|1|t|A|2570
6OLF|1|t|U|2571
6OLF|1|t|C|2572
*
6OLF|1|t|G|2731
6OLF|1|t|G|2732
6OLF|1|t|G|2733
6OLF|1|t|A|2734
6OLF|1|t|G|2735

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L8

Chain a

60S ribosomal protein L27

Chain h

60S ribosomal protein L34