IL_6OLF_229
3D structure
- PDB id
- 6OLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OLF_229 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.2501
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6OLF|1|t|C|4558
6OLF|1|t|U|4559
6OLF|1|t|C|4560
6OLF|1|t|A|4561
6OLF|1|t|G|4562
6OLF|1|t|U|4563
6OLF|1|t|A|4564
6OLF|1|t|C|4565
*
6OLF|1|t|G|4570
6OLF|1|t|G|4571
6OLF|1|t|A|4572
6OLF|1|t|A|4573
6OLF|1|t|C|4574
6OLF|1|t|C|4575
6OLF|1|t|G|4576
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain J
- 60S ribosomal protein L9
- Chain W
- 60S ribosomal protein L23
- Chain n
- 60S ribosomal protein L40
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