IL_6OLF_260

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCACUC*GGA(OMG)

Length

10 nucleotides

Bulged bases

6OLF|1|S2|G|507

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_260 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.1793

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6OLF|1|S2|C|491
6OLF|1|S2|C|492
6OLF|1|S2|A|493
6OLF|1|S2|C|494
6OLF|1|S2|U|495
6OLF|1|S2|C|496
*
6OLF|1|S2|G|506
6OLF|1|S2|G|507
6OLF|1|S2|A|508
6OLF|1|S2|OMG|509

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24