IL_6OLF_294

3D structure

PDB id

6OLF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLF_294 not in the Motif Atlas

Geometric match to IL_2QWY_009

Geometric discrepancy: 0.1895

The information below is about IL_2QWY_009

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

6OLF|1|t|A|2456
6OLF|1|t|C|2457
6OLF|1|t|G|2458
*
6OLF|1|t|C|2478
6OLF|1|t|U|2479

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain D

5.8S ribosomal RNA; 5.8S rRNA

Chain Y

60S ribosomal protein L23a