IL_6OST_129
3D structure
- PDB id
- 6OST (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RF2 pre-accommodated state bound Release complex 70S at 24ms
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6OST|1|2|A|532, 6OST|1|2|U|534, 6OST|1|2|A|535
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OST_129 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.3909
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6OST|1|2|G|515
6OST|1|2|PSU|516
6OST|1|2|G|517
6OST|1|2|C|518
6OST|1|2|C|519
6OST|1|2|A|520
6OST|1|2|G|521
*
6OST|1|2|C|528
6OST|1|2|G|529
6OST|1|2|G|530
6OST|1|2|U|531
6OST|1|2|A|532
6OST|1|2|A|533
6OST|1|2|U|534
6OST|1|2|A|535
6OST|1|2|C|536
Current chains
- Chain 2
- 16S Ribosomal RNA
Nearby chains
- Chain 4
- mRNA
- Chain 7
- Peptide chain release factor 2
- Chain h
- 30S ribosomal protein S3
- Chain i
- 30S ribosomal protein S4
- Chain q
- 30S ribosomal protein S12
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