IL_6P5J_145
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 6P5J|1|5|U|1930, 6P5J|1|5|C|1931, 6P5J|1|5|G|2055, 6P5J|1|5|A|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5J_145 not in the Motif Atlas
- Geometric match to IL_5TBW_051
- Geometric discrepancy: 0.182
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6P5J|1|5|C|1926
6P5J|1|5|U|1927
6P5J|1|5|C|1928
6P5J|1|5|A|1929
6P5J|1|5|U|1930
6P5J|1|5|C|1931
6P5J|1|5|A|1932
6P5J|1|5|G|1933
*
6P5J|1|5|C|2053
6P5J|1|5|U|2054
6P5J|1|5|G|2055
6P5J|1|5|G|2056
6P5J|1|5|A|2057
6P5J|1|5|G|2058
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AH
- uL6
- Chain AM
- L14e
- Chain AO
- uL13
- Chain AS
- eL20
- Chain Am
- eL40
Coloring options: