IL_6P5J_154

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5J_154 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0902

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6P5J|1|5|G|2358
6P5J|1|5|U|2359
6P5J|1|5|A|2360
6P5J|1|5|G|2361
6P5J|1|5|U|2362
6P5J|1|5|A|2363
6P5J|1|5|G|2364
*
6P5J|1|5|C|3858
6P5J|1|5|G|3859
6P5J|1|5|A|3860
6P5J|1|5|A|3861
6P5J|1|5|A|3862
6P5J|1|5|C|3863

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AC

uL4

Chain AP

uL22