IL_6P5K_027

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCACUC*GGAG

Length

10 nucleotides

Bulged bases

6P5K|1|2|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_027 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.1465

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6P5K|1|2|C|491
6P5K|1|2|C|492
6P5K|1|2|A|493
6P5K|1|2|C|494
6P5K|1|2|U|495
6P5K|1|2|C|496
*
6P5K|1|2|G|506
6P5K|1|2|G|507
6P5K|1|2|A|508
6P5K|1|2|G|509

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain Z

eS24