IL_6P5K_057

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACCA*UCCCUG

Length

11 nucleotides

Bulged bases

6P5K|1|2|C|1215, 6P5K|1|2|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_057 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3488

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6P5K|1|2|C|1213
6P5K|1|2|A|1214
6P5K|1|2|C|1215
6P5K|1|2|C|1216
6P5K|1|2|A|1217
*
6P5K|1|2|U|1681
6P5K|1|2|C|1682
6P5K|1|2|C|1683
6P5K|1|2|C|1684
6P5K|1|2|U|1685
6P5K|1|2|G|1686

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain R

uS9

Chain b

eS26

Chain d

eS28