IL_6P5K_057
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CACCA*UCCCUG
- Length
- 11 nucleotides
- Bulged bases
- 6P5K|1|2|C|1215, 6P5K|1|2|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_057 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.3488
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6P5K|1|2|C|1213
6P5K|1|2|A|1214
6P5K|1|2|C|1215
6P5K|1|2|C|1216
6P5K|1|2|A|1217
*
6P5K|1|2|U|1681
6P5K|1|2|C|1682
6P5K|1|2|C|1683
6P5K|1|2|C|1684
6P5K|1|2|U|1685
6P5K|1|2|G|1686
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain G
- uS7
- Chain R
- uS9
- Chain b
- eS26
- Chain d
- eS28
Coloring options: