3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CACCA*UCCCUG
Length
11 nucleotides
Bulged bases
6P5K|1|2|C|1215, 6P5K|1|2|C|1216
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_057 not in the Motif Atlas
Geometric match to IL_4V88_408
Geometric discrepancy: 0.3488
The information below is about IL_4V88_408
Detailed Annotation
C-loop with extra cWW pair
Broad Annotation
C-loop
Motif group
IL_11347.2
Basepair signature
cWW-cWW-L-cWW-L
Number of instances in this motif group
3

Unit IDs

6P5K|1|2|C|1213
6P5K|1|2|A|1214
6P5K|1|2|C|1215
6P5K|1|2|C|1216
6P5K|1|2|A|1217
*
6P5K|1|2|U|1681
6P5K|1|2|C|1682
6P5K|1|2|C|1683
6P5K|1|2|C|1684
6P5K|1|2|U|1685
6P5K|1|2|G|1686

Current chains

Chain 2
18S rRNA

Nearby chains

Chain G
uS7
Chain R
uS9
Chain b
eS26
Chain d
eS28

Coloring options:


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