IL_6P5K_065

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGG*UCUGUGA

Length

10 nucleotides

Bulged bases

6P5K|1|2|U|1494, 6P5K|1|2|G|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_065 not in the Motif Atlas

Homologous match to IL_4V88_451

Geometric discrepancy: 0.1566

The information below is about IL_4V88_451

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_97255.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6P5K|1|2|U|1333
6P5K|1|2|G|1334
6P5K|1|2|G|1335
*
6P5K|1|2|U|1492
6P5K|1|2|C|1493
6P5K|1|2|U|1494
6P5K|1|2|G|1495
6P5K|1|2|U|1496
6P5K|1|2|G|1497
6P5K|1|2|A|1498

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

IAPV-IRES

Chain E

uS3

Chain L

eS10

Chain V

uS10

Chain e

eS29