IL_6P5K_123
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAGGUGG*UGUUACAGC
- Length
- 17 nucleotides
- Bulged bases
- 6P5K|1|5|G|748, 6P5K|1|5|C|915
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_123 not in the Motif Atlas
- Geometric match to IL_5TBW_020
- Geometric discrepancy: 0.2424
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6P5K|1|5|G|745
6P5K|1|5|A|746
6P5K|1|5|A|747
6P5K|1|5|G|748
6P5K|1|5|G|749
6P5K|1|5|U|750
6P5K|1|5|G|751
6P5K|1|5|G|752
*
6P5K|1|5|U|910
6P5K|1|5|G|911
6P5K|1|5|U|912
6P5K|1|5|U|913
6P5K|1|5|A|914
6P5K|1|5|C|915
6P5K|1|5|A|916
6P5K|1|5|G|917
6P5K|1|5|C|918
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AM
- L14e
- Chain AS
- eL20
Coloring options: