3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAAAG*CUAGUAGC
Length
13 nucleotides
Bulged bases
6P5K|1|5|A|1650, 6P5K|1|5|G|1654
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_137 not in the Motif Atlas
Homologous match to IL_5TBW_028
Geometric discrepancy: 0.0846
The information below is about IL_5TBW_028
Detailed Annotation
tHW-tHW cross-strand stack
Broad Annotation
No text annotation
Motif group
IL_17470.7
Basepair signature
cWW-tWW-L-R-tWH-L-cWW
Number of instances in this motif group
7

Unit IDs

6P5K|1|5|G|1522
6P5K|1|5|A|1523
6P5K|1|5|A|1524
6P5K|1|5|A|1525
6P5K|1|5|G|1526
*
6P5K|1|5|C|1648
6P5K|1|5|U|1649
6P5K|1|5|A|1650
6P5K|1|5|G|1651
6P5K|1|5|U|1652
6P5K|1|5|A|1653
6P5K|1|5|G|1654
6P5K|1|5|C|1655

Current chains

Chain 5
28S rRNA

Nearby chains

Chain AC
uL4
Chain AL
eL13
Chain AN
eL15
Chain Aa
uL15
Chain Aj
eL37

Coloring options:


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