IL_6P5K_182

3D structure

PDB id

6P5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5K_182 not in the Motif Atlas

Homologous match to IL_5TBW_074

Geometric discrepancy: 0.0845

The information below is about IL_5TBW_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6P5K|1|5|A|2832
6P5K|1|5|A|2833
6P5K|1|5|C|2834
6P5K|1|5|A|2835
6P5K|1|5|A|2836
6P5K|1|5|U|2837
6P5K|1|5|G|2838
*
6P5K|1|5|C|3850
6P5K|1|5|U|3851
6P5K|1|5|A|3852
6P5K|1|5|U|3853

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain AP

uL22

Chain Ad

eL31