3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CAG*CGUGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_210 not in the Motif Atlas
Homologous match to IL_5TBW_099
Geometric discrepancy: 0.1015
The information below is about IL_5TBW_099
Detailed Annotation
Isolated tHS basepair with bulges
Broad Annotation
No text annotation
Motif group
IL_71241.2
Basepair signature
cWW-cWW-tSH-cWW-L-L
Number of instances in this motif group
7

Unit IDs

6P5K|1|5|C|4243
6P5K|1|5|A|4244
6P5K|1|5|G|4245
*
6P5K|1|5|C|4263
6P5K|1|5|G|4264
6P5K|1|5|U|4265
6P5K|1|5|G|4266
6P5K|1|5|G|4267

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain AD
uL18
Chain AJ
uL11
Chain AT
eL21

Coloring options:


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