IL_6P5K_229
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_229 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.1271
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6P5K|1|5|C|4596
6P5K|1|5|U|4597
6P5K|1|5|C|4598
6P5K|1|5|A|4599
6P5K|1|5|G|4600
6P5K|1|5|U|4601
6P5K|1|5|A|4602
6P5K|1|5|C|4603
*
6P5K|1|5|G|4608
6P5K|1|5|G|4609
6P5K|1|5|A|4610
6P5K|1|5|A|4611
6P5K|1|5|C|4612
6P5K|1|5|C|4613
6P5K|1|5|G|4614
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AB
- uL3
- Chain AH
- uL6
- Chain AV
- uL14
- Chain Am
- eL40
Coloring options: