IL_6P5K_310
3D structure
- PDB id
- 6P5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUA*UUCU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5K_310 not in the Motif Atlas
- Homologous match to IL_8CRE_044
- Geometric discrepancy: 0.1368
- The information below is about IL_8CRE_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77658.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
6P5K|1|5|A|1746
6P5K|1|5|U|1747
6P5K|1|5|U|1748
6P5K|1|5|A|1749
*
6P5K|1|5|U|1781
6P5K|1|5|U|1782
6P5K|1|5|C|1783
6P5K|1|5|U|1784
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 1
- IAPV-IRES
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- uL18
- Chain AI
- uL16
- Chain AT
- eL21
Coloring options: