3D structure

PDB id
6P5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AUUA*UUCU
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6P5K_310 not in the Motif Atlas
Homologous match to IL_8CRE_044
Geometric discrepancy: 0.1368
The information below is about IL_8CRE_044
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_77658.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
34

Unit IDs

6P5K|1|5|A|1746
6P5K|1|5|U|1747
6P5K|1|5|U|1748
6P5K|1|5|A|1749
*
6P5K|1|5|U|1781
6P5K|1|5|U|1782
6P5K|1|5|C|1783
6P5K|1|5|U|1784

Current chains

Chain 5
28S rRNA

Nearby chains

Chain 1
IAPV-IRES
Chain 7
5S ribosomal RNA; 5S rRNA
Chain AD
uL18
Chain AI
uL16
Chain AT
eL21

Coloring options:


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