IL_6POM_003

3D structure

PDB id

6POM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the full-length Bacillus subtilis glyQS T-box riboswitch in complex with tRNA-Gly

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

UGAAAGCGAC*GA

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6POM_003 not in the Motif Atlas

Geometric match to IL_4JRC_004

Geometric discrepancy: 0.3098

The information below is about IL_4JRC_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64048.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R

Number of instances in this motif group

2

Unit IDs

6POM|1|A|U|50
6POM|1|A|G|51
6POM|1|A|A|52
6POM|1|A|A|53
6POM|1|A|A|54
6POM|1|A|G|55
6POM|1|A|C|56
6POM|1|A|G|57
6POM|1|A|A|58
6POM|1|A|C|59
*
6POM|1|A|G|81
6POM|1|A|A|82

Current chains

Chain A

T-box GlyQS leader (155-MER)

Nearby chains

Chain B

Transfer RNA; tRNA