IL_6Q95_021
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGAAGC*GUGGAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q95_021 not in the Motif Atlas
- Geometric match to IL_7A0S_018
- Geometric discrepancy: 0.1606
- The information below is about IL_7A0S_018
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_06136.2
- Basepair signature
- cWW-tHS-cWW-tHS-tSH-tSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
6Q95|1|1|U|703
6Q95|1|1|G|704
6Q95|1|1|A|705
6Q95|1|1|A|706
6Q95|1|1|G|707
6Q95|1|1|C|708
*
6Q95|1|1|G|723
6Q95|1|1|U|724
6Q95|1|1|G|725
6Q95|1|1|G|726
6Q95|1|1|A|727
6Q95|1|1|G|728
Current chains
- Chain 1
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
Coloring options: