IL_6Q95_137

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

6Q95|1|2|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_137 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1421

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6Q95|1|2|G|662
6Q95|1|2|A|663
6Q95|1|2|G|664
6Q95|1|2|A|665
6Q95|1|2|G|666
*
6Q95|1|2|U|740
6Q95|1|2|G|741
6Q95|1|2|G|742
6Q95|1|2|U|743

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain k

30S ribosomal protein S6

Chain t

30S ribosomal protein S15

Chain w

30S ribosomal protein S18