IL_6Q95_142

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_142 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.149

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6Q95|1|2|G|887
6Q95|1|2|G|888
6Q95|1|2|A|889
6Q95|1|2|G|890
6Q95|1|2|U|891
6Q95|1|2|A|892
6Q95|1|2|C|893
6Q95|1|2|G|894
*
6Q95|1|2|U|905
6Q95|1|2|G|906
6Q95|1|2|A|907
6Q95|1|2|A|908
6Q95|1|2|A|909
6Q95|1|2|C|910

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain q

30S ribosomal protein S12

Chain v

30S ribosomal protein S17