IL_6Q95_159

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q95_159 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1279

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6Q95|1|2|C|1303
6Q95|1|2|G|1304
6Q95|1|2|G|1305
6Q95|1|2|A|1306
6Q95|1|2|U|1307
6Q95|1|2|U|1308
*
6Q95|1|2|A|1329
6Q95|1|2|U|1330
6Q95|1|2|G|1331
6Q95|1|2|A|1332
6Q95|1|2|A|1333
6Q95|1|2|G|1334

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain r

30S ribosomal protein S13

Chain z

30S ribosomal protein Thx