IL_6Q97_033
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGGG*CUUAC
- Length
- 9 nucleotides
- Bulged bases
- 6Q97|1|1|A|896
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q97_033 not in the Motif Atlas
- Geometric match to IL_2IL9_001
- Geometric discrepancy: 0.3987
- The information below is about IL_2IL9_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_42334.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6Q97|1|1|G|880
6Q97|1|1|G|881
6Q97|1|1|G|882
6Q97|1|1|G|883
*
6Q97|1|1|C|893
6Q97|1|1|U|894
6Q97|1|1|U|895
6Q97|1|1|A|896
6Q97|1|1|C|897
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Transfer-messenger RNA; tmRNA
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