IL_6Q97_048

3D structure

PDB id

6Q97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAACG*CGGG

Length

10 nucleotides

Bulged bases

6Q97|1|1|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q97_048 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3615

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6Q97|1|1|C|1319
6Q97|1|1|C|1320
6Q97|1|1|A|1321
6Q97|1|1|A|1322
6Q97|1|1|C|1323
6Q97|1|1|G|1324
*
6Q97|1|1|C|1330
6Q97|1|1|G|1331
6Q97|1|1|G|1332
6Q97|1|1|G|1333

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 6

Nascent peptide

Chain S

50S ribosomal protein L22

Chain T

50S ribosomal protein L23