3D structure

PDB id
6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CUGC*GAUGG
Length
9 nucleotides
Bulged bases
6Q97|1|1|A|1981
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6Q97_065 not in the Motif Atlas
Geometric match to IL_402D_001
Geometric discrepancy: 0.2772
The information below is about IL_402D_001
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_77658.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
34

Unit IDs

6Q97|1|1|C|1768
6Q97|1|1|U|1769
6Q97|1|1|G|1770
6Q97|1|1|C|1771
*
6Q97|1|1|G|1980
6Q97|1|1|A|1981
6Q97|1|1|U|1982
6Q97|1|1|G|1983
6Q97|1|1|G|1984

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2502 s