IL_6Q98_030

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6Q98|1|1|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q98_030 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.1967

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6Q98|1|1|U|1018
6Q98|1|1|U|1019
6Q98|1|1|A|1020
6Q98|1|1|A|1021
6Q98|1|1|G|1022
6Q98|1|1|U|1023
6Q98|1|1|G|1024
*
6Q98|1|1|C|1140
6Q98|1|1|U|1141
6Q98|1|1|A|1142
6Q98|1|1|A|1143
6Q98|1|1|A|1144

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain f

50S ribosomal protein L36