IL_6Q98_059

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UGAGGU*AUGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q98_059 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.29

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_06136.2

Basepair signature

cWW-tHS-cWW-tHS-tSH-tSH-cWW

Number of instances in this motif group

6

Unit IDs

6Q98|1|1|U|1720
6Q98|1|1|G|1721
6Q98|1|1|A|1722
6Q98|1|1|G|1723
6Q98|1|1|G|1724
6Q98|1|1|U|1725
*
6Q98|1|1|A|1735
6Q98|1|1|U|1736
6Q98|1|1|G|1737
6Q98|1|1|G|1738
6Q98|1|1|A|1739
6Q98|1|1|G|1740

Current chains

Chain 1

23S ribosomal RNA

Nearby chains