IL_6Q98_120

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6Q98|1|2|A|532, 6Q98|1|2|U|534, 6Q98|1|2|A|535

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6Q98_120 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2165

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6Q98|1|2|G|515
6Q98|1|2|PSU|516
6Q98|1|2|G|517
6Q98|1|2|C|518
6Q98|1|2|C|519
6Q98|1|2|A|520
6Q98|1|2|G|521
*
6Q98|1|2|C|528
6Q98|1|2|G|529
6Q98|1|2|G|530
6Q98|1|2|U|531
6Q98|1|2|A|532
6Q98|1|2|A|533
6Q98|1|2|U|534
6Q98|1|2|A|535
6Q98|1|2|C|536

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Transfer-messenger RNA; tmRNA

Chain h

30S ribosomal protein S3

Chain q

30S ribosomal protein S12