IL_6Q98_189
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CCGU(G7M)*CCG(2MG)
- Length
- 9 nucleotides
- Bulged bases
- 6Q98|1|1|U|2068
- QA status
- Modified nucleotides: G7M, 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q98_189 not in the Motif Atlas
- Geometric match to IL_1JID_002
- Geometric discrepancy: 0.2792
- The information below is about IL_1JID_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6Q98|1|1|C|2065
6Q98|1|1|C|2066
6Q98|1|1|G|2067
6Q98|1|1|U|2068
6Q98|1|1|G7M|2069
*
6Q98|1|1|C|2442
6Q98|1|1|C|2443
6Q98|1|1|G|2444
6Q98|1|1|2MG|2445
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Transfer-messenger RNA; tmRNA
- Chain 6
- Nascent peptide
- Chain D
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
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