IL_6Q98_208
3D structure
- PDB id
- 6Q98 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- ACAAUG*UGAU
- Length
- 10 nucleotides
- Bulged bases
- 6Q98|1|2|G|388
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6Q98_208 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.2496
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6Q98|1|2|A|371
6Q98|1|2|C|372
6Q98|1|2|A|373
6Q98|1|2|A|374
6Q98|1|2|U|375
6Q98|1|2|G|376
*
6Q98|1|2|U|387
6Q98|1|2|G|388
6Q98|1|2|A|389
6Q98|1|2|U|390
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain u
- 30S ribosomal protein S16
Coloring options: