IL_6QDW_029

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6QDW|1|b|U|848, 6QDW|1|b|U|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QDW_029 not in the Motif Atlas

Geometric match to IL_9E6Q_013

Geometric discrepancy: 0.3895

The information below is about IL_9E6Q_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

6QDW|1|b|A|846
6QDW|1|b|A|847
6QDW|1|b|U|848
6QDW|1|b|U|849
6QDW|1|b|C|850
*
6QDW|1|b|G|932
6QDW|1|b|U|933
6QDW|1|b|U|934
6QDW|1|b|A|935
6QDW|1|b|U|936

Current chains

Chain b

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L30