IL_6QDW_042

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6QDW|1|b|U|1035

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QDW_042 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.0897

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6QDW|1|b|G|1033
6QDW|1|b|A|1034
6QDW|1|b|U|1035
6QDW|1|b|G|1036
*
6QDW|1|b|C|1123
6QDW|1|b|G|1124
6QDW|1|b|C|1125

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain m

50S ribosomal protein L16