IL_6QDW_072

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6QDW|1|b|A|1803, 6QDW|1|b|C|1818, 6QDW|1|b|U|1822

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QDW_072 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0579

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6QDW|1|b|U|1800
6QDW|1|b|G|1801
6QDW|1|b|C|1802
6QDW|1|b|A|1803
6QDW|1|b|A|1804
6QDW|1|b|A|1805
6QDW|1|b|C|1806
*
6QDW|1|b|G|1815
6QDW|1|b|G|1816
6QDW|1|b|A|1817
6QDW|1|b|C|1818
6QDW|1|b|G|1819
6QDW|1|b|U|1820
6QDW|1|b|A|1821
6QDW|1|b|U|1822
6QDW|1|b|A|1823

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2