IL_6QDW_099
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CUGAG*CGAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 6QDW|1|b|G|2784
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QDW_099 not in the Motif Atlas
- Homologous match to IL_5J7L_345
- Geometric discrepancy: 0.0934
- The information below is about IL_5J7L_345
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6QDW|1|b|C|2640
6QDW|1|b|U|2641
6QDW|1|b|G|2642
6QDW|1|b|A|2643
6QDW|1|b|G|2644
*
6QDW|1|b|C|2778
6QDW|1|b|G|2779
6QDW|1|b|A|2780
6QDW|1|b|G|2781
6QDW|1|b|A|2782
6QDW|1|b|U|2783
6QDW|1|b|G|2784
6QDW|1|b|A|2785
6QDW|1|b|G|2786
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L3
- Chain j
- 50S ribosomal protein L13
Coloring options: