IL_6QT0_094
3D structure
- PDB id
- 6QT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAU*AGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6QT0_094 not in the Motif Atlas
- Homologous match to IL_5TBW_099
- Geometric discrepancy: 0.1137
- The information below is about IL_5TBW_099
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_71241.2
- Basepair signature
- cWW-cWW-tSH-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
6QT0|1|A|C|2666
6QT0|1|A|A|2667
6QT0|1|A|U|2668
*
6QT0|1|A|A|2686
6QT0|1|A|G|2687
6QT0|1|A|U|2688
6QT0|1|A|A|2689
6QT0|1|A|G|2690
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L11-A
- Chain P
- 60S ribosomal protein L5
- Chain T
- 60S ribosomal protein L21-A
- Chain x
- 5S ribosomal RNA; 5S rRNA
Coloring options: