IL_6QT0_114

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

6QT0|1|A|U|3056, 6QT0|1|A|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QT0_114 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.1259

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6QT0|1|A|U|3054
6QT0|1|A|U|3055
6QT0|1|A|U|3056
6QT0|1|A|U|3057
6QT0|1|A|U|3058
6QT0|1|A|G|3059
*
6QT0|1|A|C|3084
6QT0|1|A|G|3085
6QT0|1|A|A|3086
6QT0|1|A|A|3087
6QT0|1|A|G|3088

Current chains

Chain A

25S rRNA

Nearby chains

Chain C

60S ribosomal protein L3

Chain d

60S ribosomal protein L31-A

Chain v

60S ribosomal protein L24-A