IL_6QT0_152

3D structure

PDB id

6QT0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

6QT0|1|A|G|1236

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QT0_152 not in the Motif Atlas

Homologous match to IL_8P9A_283

Geometric discrepancy: 0.543

The information below is about IL_8P9A_283

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16218.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6QT0|1|A|G|1234
6QT0|1|A|U|1235
6QT0|1|A|G|1236
6QT0|1|A|G|1237
6QT0|1|A|C|1238
*
6QT0|1|A|G|1250
6QT0|1|A|A|1251
6QT0|1|A|A|1252
6QT0|1|A|U|1253
6QT0|1|A|C|1254

Current chains

Chain A

25S rRNA

Nearby chains