IL_6QTZ_020

3D structure

PDB id

6QTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

6QTZ|1|A|U|534, 6QTZ|1|A|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QTZ_020 not in the Motif Atlas

Homologous match to IL_5TBW_020

Geometric discrepancy: 0.143

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6QTZ|1|A|G|531
6QTZ|1|A|A|532
6QTZ|1|A|A|533
6QTZ|1|A|U|534
6QTZ|1|A|G|535
6QTZ|1|A|U|536
6QTZ|1|A|A|537
6QTZ|1|A|G|538
*
6QTZ|1|A|U|553
6QTZ|1|A|A|554
6QTZ|1|A|U|555
6QTZ|1|A|U|556
6QTZ|1|A|A|557
6QTZ|1|A|U|558
6QTZ|1|A|A|559
6QTZ|1|A|G|560
6QTZ|1|A|C|561

Current chains

Chain A

25S rRNA

Nearby chains

Chain M

60S ribosomal protein L14-A

Chain S

60S ribosomal protein L20-A