IL_6QTZ_123

3D structure

PDB id

6QTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CACAC*GCGUGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6QTZ_123 not in the Motif Atlas

Homologous match to IL_8P9A_349

Geometric discrepancy: 0.5181

The information below is about IL_8P9A_349

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

6QTZ|1|A|C|3162
6QTZ|1|A|A|3163
6QTZ|1|A|C|3164
6QTZ|1|A|A|3165
6QTZ|1|A|C|3166
*
6QTZ|1|A|G|3284
6QTZ|1|A|C|3285
6QTZ|1|A|G|3286
6QTZ|1|A|U|3287
6QTZ|1|A|G|3288
6QTZ|1|A|G|3289

Current chains

Chain A

25S rRNA

Nearby chains